PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G21640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 264aa    MW: 29518.2 Da    PI: 6.9574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G21640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.8e-053575145
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45
                     +r  ++erE+  Rd+ N+ f eL  ll ++     + + Ka +L 
  OPUNC07G21640.1 35 KRIHKSEREKLKRDKQNDLFTELGNLLEPD----RQNNGKACVLG 75
                     68899**********************996....34455555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1131103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-831103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.29E-43289No hitNo description
PROSITE profilePS5088811.0713484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVPRDRVNAA GGGGVEGRLV QSGIVNKKCD KKAPKRIHKS EREKLKRDKQ NDLFTELGNL  60
LEPDRQNNGK ACVLGETTRI LKDLLSQVES LRKENNALKN ESHYVALERN ELHDDNSMLR  120
NEILELQNEL RTQMEGNPVW SHVNARPALS VPYPTTGVFP VQHLPHLPVT TTAAFPQQQP  180
VIIEQHYVAT PRELQLFPES ATSEDSEPSQ EHGISDQVTR PQARYPTPTV TMPVNLFPVL  240
PGRQDQQCSS GTTVTSEEGR IGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709630.0AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645391.11e-175PREDICTED: transcription factor bHLH47
RefseqXP_015645392.11e-175PREDICTED: transcription factor bHLH47
RefseqXP_015645393.11e-175PREDICTED: transcription factor bHLH47
TrEMBLA0A0E0LNN50.0A0A0E0LNN5_ORYPU; Uncharacterized protein
STRINGBGIOSGA023869-PA1e-176(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-32bHLH family protein